DNA Damage Atlas

GSM3444984-TK6_DMSO_rep1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR8105396


Source Project ID:   

GSE121740

Cell Type:   

TK6


Organism:   

Homo sapiens


Treatment:   

DMSO


Treatment Time:   

4hrs


Treatment Dose:   

20uM


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 500


Technique:   

sBLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.023256


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl0002201529841552451542872410.34+
chrUn_gl0002201089251112631103202322+
chrUn_gl0002201571871607231589162186.33+
rDNA3229615749001868.96+
chrUn_gl0002201130941185371149441486.48+
rDNA88171308195111417.5+
chrUn_gl000216804718088080710204.812-
chr1010904520810904541710904541392.4935-
chrUn_gl000216905210771957992.3074-
chrUn_gl00021616308016385316352088.5698+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl0002201585061602811589161983.59+
rDNA91361095995111893.38+
chrUn_gl0002201145291164521149441832.09+
rDNA3593549649001817.44+
chrUn_gl0002201090251112521103201543.01+
chrUn_gl0002201529841552391542871520.44+
chrUn_gl000216804718086480710260.938-
chrUn_gl000216913197879579168.165-
chr10109045212109045417109045413128.528-
chrUn_gl000216118220361871109.922-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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