DNA Damage Atlas

GSM3444986-TK6_DMSO_rep2

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR8105398


Source Project ID:   

GSE121740

Cell Type:   

TK6


Organism:   

Homo sapiens


Treatment:   

DMSO


Treatment Time:   

4hrs


Treatment Dose:   

20uM


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 500


Technique:   

sBLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA359354964900763.484+
chrUn_gl000220109025111252110320649.002+
chrUn_gl000220152984155239154292624.13+
rDNA9136109599511621.452+
chrUn_gl000220158506160281158916616.896+
chrUn_gl000220114529116452114944565.475+
chrUn_gl000220157236157899157319484.949+
chrUn_gl000220113224113906113347460.32+
chrUn_gl000216802308086480710193.762-
chr10109045212109045418109045414169.33-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl0002201585061602811589161983.59+
rDNA91361095995111893.38+
chrUn_gl0002201145291164521149441832.09+
rDNA3593549649001817.44+
chrUn_gl0002201572361578991573191575.8+
chrUn_gl0002201132241139061133471570.63+
chrUn_gl0002201090251112521103201543.01+
chrUn_gl0002201529841552391542921520.44+
chrUn_gl000216804718086480710260.938-
chrUn_gl000216913197879583168.165-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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