DNA Damage Atlas

GSM3444987-TK6_ETO_rep2

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR8105399


Source Project ID:   

GSE121740

Cell Type:   

TK6


Organism:   

Homo sapiens


Treatment:   

Etoposide


Treatment Time:   

4hrs


Treatment Dose:   

30uM


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 500


Technique:   

sBLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl000220152986155231154425221.072+
chrUn_gl000220109004111262110453218.318+
rDNA332758555033199.36+
chrUn_gl000220114321116380115715168.692+
chrUn_gl000220158232160344159687162.455+
chrUn_gl000220157201157900157319147.523+
rDNA77581093210275120.592+
chrUn_gl00022013355713593913449048.4542-
rDNA16239228781962740.4016-
chr1010312445010312485610312469537.8071-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl000220152986155231154425305.126+
chrUn_gl000220109006111262110453300.008+
rDNA332858555033269.971+
chrUn_gl000220157201157900157319259.938+
chrUn_gl000220114321116380115715241.98+
chrUn_gl000220158232160344159687233.778+
rDNA77581093210275179.725+
chr421583635215838562158364538.3461+
chrUn_gl00022811468812047611922233.5456+
chr1010312445210312485610312469531.8221-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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