DNA Damage Atlas

GSM3444988-K562_DMSO

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR8105401


Source Project ID:   

GSE121740

Cell Type:   

K562


Organism:   

Homo sapiens


Treatment:   

DMSO


Treatment Time:   

4hrs


Treatment Dose:   

20uM


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 500


Technique:   

sBLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl000220114483116223116176584.17-
chrUn_gl000220158454160338160148558.414-
rDNA90841079110736498.15-
rDNA354456014241207.977+
chrUn_gl000220108967111224110432192.76+
chrUn_gl000220152938155170154404187.24+
chrUn_gl00022013013513146813045766.7587+
rDNA24575267522654962.3753-
rDNA29136314113065758.5294-
chrUn_gl00022012122712718012669055.2546-
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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