DNA Damage Atlas

GSM3444989-K562_ETO

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR8105402


Source Project ID:   

GSE121740

Cell Type:   

K562


Organism:   

Homo sapiens


Treatment:   

Etoposide


Treatment Time:   

4hrs


Treatment Dose:   

30uM


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 500


Technique:   

sBLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl000220153095154985153627203.937+
chrUn_gl000220108978111223109655170.008+
rDNA355958424235166.352+
chrUn_gl000220158443160187159687155.932+
chrUn_gl000220114474116249115715155.689+
rDNA9060108749495112.306+
rDNA133371395913846107.155-
rDNA771584627965101.008+
rDNA24630267742600959.5344+
chrUn_gl00022010287910411210370544.6212-
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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