DNA Damage Atlas

GSM3444991-TK6_untr_DMSO_rep1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR8105404


Source Project ID:   

GSE121740

Cell Type:   

TK6


Organism:   

Homo sapiens


Treatment:   

DMSO


Treatment Time:   

4hrs


Treatment Dose:   

20uM


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 500


Technique:   

sBLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl0002201090661112161103281095.96+
rDNA3528585549081046.81+
chrUn_gl000220153036155390154300995.664+
chrUn_gl000220114137116360115715809.265+
chrUn_gl000220157991160583159687672.659+
rDNA85831307710275390.557+
chrUn_gl000216910197909581142.821-
chrUn_gl000216802948111880710134.621-
chr9_gl000199_random137730138282138136103.719-
chrUn_gl00021675438763407584584.3006-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl0002201141371163601157151025.96+
chrUn_gl000220158244160580159687967.552+
chrUn_gl000220109066111216110328879.709+
rDNA360558554908854.032+
chrUn_gl000220153036155274154300836.008+
rDNA85831096010275821.183+
chrUn_gl000216802948111880710222.147-
chrUn_gl000216910197879581115.994-
chr9_gl000199_random13773013828213813679.356-
chrUn_gl00022513466513524713487071.7602+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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