DNA Damage Atlas

GSM3444992-TK6_DRB_ETO_rep1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR8105405


Source Project ID:   

GSE121740

Cell Type:   

TK6


Organism:   

Homo sapiens


Treatment:   

DRB + Etoposide


Treatment Time:   

3hrs + 4hrs


Treatment Dose:   

200uM DRB + 30uM Etoposide


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 500


Technique:   

sBLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl000220158398160277159687183.803+
rDNA90741086510275182.557+
chrUn_gl000220114426116364115715168.571+
rDNA350557285012157.917+
chrUn_gl000220152897155232154425152.313+
chrUn_gl000220108900111268110453146.19+
chrUn_gl00021680172812528071099.7441-
chrUn_gl000216911110828958163.2124-
chr9_gl000199_random13763313853713813762.5757-
chrUn_gl00022811531412021411858051.8125-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl000220114493116217115715166.317+
chrUn_gl000220158462160277159687161.168+
chrUn_gl000216802158102880710160.669-
rDNA91271078810275159.64+
rDNA360556405012150.178+
chrUn_gl000220152897155136154425135.966+
chrUn_gl000220109025111258110453134.96+
chrUn_gl00021691119793958195.1898-
chrUn_gl00022585480860268561893.9259+
chr9_gl000199_random13779913826813813790.0044-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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