DNA Damage Atlas

GSM3444993-TK6_untr_ETO_rep1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR8105406


Source Project ID:   

GSE121740

Cell Type:   

TK6


Organism:   

Homo sapiens


Treatment:   

Etoposide


Treatment Time:   

4hrs


Treatment Dose:   

30uM


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 500


Technique:   

sBLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl000220158079160387159687345.364+
chrUn_gl000220108853111276110453254.136+
chrUn_gl000220113056116403115715248.161+
chrUn_gl000220152747155258154425242.71+
rDNA76721093910275232.33+
rDNA335971885033170.962+
chrUn_gl00022811498712031211851545.5872+
chrUn_gl00021652762186737.0005-
chrUn_gl000216786513191958132.325-
chrUn_gl00021464003661666506629.4066+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl000220114345116403115715445.313+
chrUn_gl000220158246160377159687433.886+
rDNA88401092010275392.977+
rDNA341258535033212.884+
chrUn_gl000220108853111261110453206.916+
chrUn_gl000220152820155258154425203.659+
chrUn_gl0002163892762186743.636-
chrUn_gl00022811527312021411851542.643+
chrUn_gl000216786512915958132.1528-
chrUn_gl00021464003660536506631.8573+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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