DNA Damage Atlas

GSM3444994-TK6_DRB_DMSO_rep2

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR8105407


Source Project ID:   

GSE121740

Cell Type:   

TK6


Organism:   

Homo sapiens


Treatment:   

DRB + DMSO


Treatment Time:   

3hrs + 4hrs


Treatment Dose:   

200uM DRB + 20uM DMSO


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 500


Technique:   

sBLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl000220158643160208159688230.3+
chrUn_gl000220114519116235115716207.475+
rDNA90591079910276162.807+
chrUn_gl000216802178123480705151.151-
rDNA350558355012120.05+
chrUn_gl000220152790155230154404114.075+
chrUn_gl000220108751111258110432111.027+
chrUn_gl00022585426860278568675.8188-
chrUn_gl00021689129790958161.9033-
chr482515239825154598251545053.6524-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl000220158643160208159688226.962+
chrUn_gl000220114519116235115716207.171+
rDNA90601079910276176.875+
rDNA351858355012162.451+
chrUn_gl000220108925111258110432154.981+
chrUn_gl000220152790155230154404149.517+
chrUn_gl000216802178123480705124.371-
chrUn_gl00022585426860278568690.1279-
chrUn_gl00021689129790958183.8291-
chrUn_gl00021675271763907584558.3665-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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