DNA Damage Atlas

GSM3444995-TK6_untr_DMSO_rep2

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR8105408


Source Project ID:   

GSE121740

Cell Type:   

TK6


Organism:   

Homo sapiens


Treatment:   

DMSO


Treatment Time:   

4hrs


Treatment Dose:   

20uM


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 500


Technique:   

sBLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl0002201582441605801596871191.41+
chrUn_gl000220113156116423115715888.419+
rDNA77461096010275739.887+
chrUn_gl000220109025111300110328627.798+
rDNA360558824908618.007+
chrUn_gl000220152997155274154300614.839+
chr4825152478251558382515450100.185-
chrUn_gl00022415366194251840073.7505+
chrUn_gl00022513466513524813487272.6901+
chrUn_gl00021688509787958869.285-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl0002201141371163601157151025.96+
chrUn_gl000220158244160580159687967.552+
chrUn_gl000220109066111216110328879.709+
rDNA360558554908854.032+
chrUn_gl000220153036155274154300836.008+
rDNA85831096010275821.183+
chrUn_gl000216802948111880710222.147-
chrUn_gl000216910197879588115.994-
chr9_gl000199_random13773013828213813779.356-
chrUn_gl00022513466513524713487271.7602+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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