DNA Damage Atlas

GSM3444996-TK6_DRB_ETO_rep2

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR8105409


Source Project ID:   

GSE121740

Cell Type:   

TK6


Organism:   

Homo sapiens


Treatment:   

DRB + Etoposide


Treatment Time:   

3hrs + 4hrs


Treatment Dose:   

200uM DRB + 30uM Etoposide


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 500


Technique:   

sBLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl000216802158102880710189.836-
chrUn_gl000220114493116217115719143.609+
chrUn_gl000220158462160334159691128.176+
rDNA360556405012127.982+
rDNA91271078810279122.923+
chrUn_gl000220109025111258110432115.014+
chrUn_gl000220152897155136154404113.09+
chrUn_gl00022585480860268561875.8198+
chr9_gl000199_random13779913826813813761.7018-
chrUn_gl00022012219112691712421758.5103-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl000220114493116217115719166.317+
chrUn_gl000220158462160277159691161.168+
chrUn_gl000216802158102880710160.669-
rDNA91271078810279159.64+
rDNA360556405012150.178+
chrUn_gl000220152897155136154404135.966+
chrUn_gl000220109025111258110432134.96+
chrUn_gl00021691119793958195.1898-
chrUn_gl00022585480860268561893.9259+
chr9_gl000199_random13779913826813813790.0044-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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