DNA Damage Atlas

GSM3487638-pch2_sample_1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR8240429


Source Project ID:   

GSE122882

Organism:   

Saccharomyces cerevisiae


Genotype:   

pch2 mutant


Harvested Time:   

collected at 4 hr after transfer to sporulation medium.


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

SPO11-oligo


Others:   

epitope tag: Spo11-Flag


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrXII4512294554404530765074.61-
chrXII4579554645734622133364.08-
chrVI9462996653957963033.26+
chrIV8347198369098358622221.04+
chrVII6088876109476101321944.92+
chrVIII1215851232931221601849.95-
chrVIII1892911915231903451717.92+
chrVII3973373989353978721501.34+
chrXV2670812686382677661498.61-
chrIII4023742567408651349.71-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrXII4513024553294530764101.99-
chrXII4594774644384622133424.93-
chrVI9462996653957962846.09+
chrIV8347198369098358622310.16+
chrVIII1215851232701221602227.21-
chrVII6088876109296101322192.91+
chrVIII1892911914591903451957.03+
chrXV2670812686382677661706.03-
chrVII3973373989063978721519.79+
chrX2803502813772808781436.63+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab