DNA Damage Atlas

GSM3487640-sir2_sample_1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR8240431


Source Project ID:   

GSE122882

Organism:   

Saccharomyces cerevisiae


Genotype:   

sir2 mutant


Harvested Time:   

collected at 4 hr after transfer to sporulation medium.


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

SPO11-oligo


Others:   

epitope tag: Spo11-Flag


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrXII4510084554304530763837.47-
chrIV8350788368708358622519.25+
chrII6421046435606427211787.9-
chrVI9467696623957961648.06+
chrXIII7974607989777982201634.6+
chrVI7413275256746991614.03-
chrVII6089816108606101501566.36-
chrXVI3389973402583395301559.15-
chrXVI6945846959936951761478.25+
chrXV2671962683852677661477.12-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrIV8350788368618358622551.34+
chrVII6089816108606101501771.57-
chrVI9467696623957961700.03+
chrII6421046434986427211648.22-
chrVII8480798495248488251627.12+
chrX2804532814432808781581.01+
chrXV2671962683852677661532.28-
chrVIII1214821231961221601485.45-
chrXIII7974607989597982201483.45+
chrIV1979791991611985831481.62+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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