DNA Damage Atlas

GSM3487641-sir2_sample_2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR8240432


Source Project ID:   

GSE122882

Organism:   

Saccharomyces cerevisiae


Genotype:   

sir2 mutant


Harvested Time:   

collected at 4 hr after transfer to sporulation medium.


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

SPO11-oligo


Others:   

epitope tag: Spo11-Flag


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrIV8350108368618358332481.54+
chrVII8480068498258487521885.78-
chrVII6087836109296101341730.95+
chrVI9461296632959551688.8+
chrXII4558464613534601861512.41-
chrVIII1213951232601221671448.54+
chrIII5607657550567531426.04-
chrX2802182814782808791426.02+
chrII6420076434986428541336.89+
chrXV2181482196312188541281.43+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrIV8350788368618358332551.34+
chrVII6089816108606101341771.57+
chrVI9467696623959551700.03+
chrII6421046434986428541648.22+
chrVII8480798495248487521627.12-
chrX2804532814432808791581.01+
chrXV2671962683852676981532.28+
chrVIII1214821231961221671485.45+
chrXIII7974607989597982201483.45+
chrIV1979791991611985831481.62+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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