DNA Damage Atlas

GSM3521384-hst34_Breakseq_rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR8354885


Source Project ID:   

GSE124132

Organism:   

Saccharomyces cerevisiae


Treatment:   

Rapamycin


Treatment Time:   

3hrs


Treatment Dose:   

8ug/ml


Genotype:   

hst4-delta HST3-FRB


Layout:   

PAIRED


Instrument model:   

NextSeq 500


Technique:   

Break-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrVII47367948141847602293.7885/
chrVII10312781032371103187174.9667/
chrVII46864546925346899071.5742/
chrVII10363071040363103931771.4602/
chrVII47224347346747273671.1064/
chrVII10482261048810104856367.7098/
chrXV53704553741853720165.8477/
chrVII10447841045415104513164.6045/
chrXII53048553089053077364.4195/
chrVII46233646299246284164.3175/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrVII47367948141847602293.7885/
chrVII10326621032903103283576.1181/
chrVII10312851032371103187174.9807/
chrVII46759546787846765074.9047/
chrVII10363071040088103931772.8032/
chrVII46864546925346899071.5742/
chrVII10483311048810104856371.2757/
chrVII47224347346747273671.1064/
chrVII46271946299246284170.9289/
chrVII10422411042566104241567.1062/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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