DNA Damage Atlas

GSM3521385-hst34_Breakseq_rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR8354886


Source Project ID:   

GSE124132

Organism:   

Saccharomyces cerevisiae


Treatment:   

Rapamycin


Treatment Time:   

3hrs


Treatment Dose:   

8ug/ml


Genotype:   

hst4-delta HST3-FRB


Layout:   

PAIRED


Instrument model:   

NextSeq 500


Technique:   

Break-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrVII46934748189547616577.7606/
chrVII10312851032903103152760.9421/
chrVII10422411042653104242759.6682/
chrVII10350361040088103944756.6573/
chrVII48266348322148288856.5278/
chrVII10296461030517103006056.1371/
chrVII46369246523946502255.5015/
chrIV95552295622595590655.1535/
chrVII10483311048925104855554.4713/
chrXIII72534172611672591354.4611/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrVII47367948141847616590.8469/
chrVII10312851032371103152768.4922/
chrVII46759546787846787664.8307/
chrVII10422411042566104242763.683/
chrVII10498651050258105000963.0129/
chrVII46556646608446565560.544/
chrVII10363071040088103944760.1655/
chrVII46864546925346881359.7577/
chrXIII71625671668071648958.8321/
chrVII10483311048810104855558.3034/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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