DNA Damage Atlas

GSM3532082-SetA_FX_dmso

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR8372212,SRR8372213,SRR8372214


Source Project ID:   

GSE124403

Cell Type:   

GM03200


Organism:   

Homo sapiens


Treatment:   

DMSO


Treatment Time:   

24hrs


Treatment Dose:   

0.02%


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

Break-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl00021463599664276507898.5619/
chrUn_gl00021675442763297587066.2457/
chrUn_gl00022811480812043011834855.1533/
chrUn_gl00021240051425804086146.2108/
chrUn_gl0002161162964160321.2316/
chr99844110181022420.3199/
chr19_gl000208_random069128719.6237/
chrUn_gl00022773445749167387917.4122/
chrUn_gl00022826271282872691114.8723/
chr1013026228913026306813026278212.3138/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl00021240254413234086192.565
chrUn_gl00021463902657736507875.535
chrUn_gl00022811614911977311834855.3835
chrUn_gl00021675569763297587053.6516
chrUn_gl00021612612036160333.1207
chr1013026259713026293613026278219.654
chrUn_gl00022284009847918428218.9518
chr19_gl000208_random4162228717.8004
chrUn_gl00023523570645814.3887
chr131904583319050003190487611.5058
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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