DNA Damage Atlas

GSM3532083-SetA_NM_003aph

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR8372215,SRR8372216


Source Project ID:   

GSE124403

Cell Type:   

GM06990


Organism:   

Homo sapiens


Treatment:   

Aphidicolin in 0.02% DMSO


Treatment Time:   

24hrs


Treatment Dose:   

0.03uM


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

Break-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random33593351823446172.7072/
chrUn_gl00022811573611972611850260.8855/
chrUn_gl00021463584658166508550.3434/
chr9_gl000199_random43838457814435938.9344/
chrUn_gl00022567110683496751635.1269/
chrUn_gl00022010119010829410309533.7734/
chrUn_gl00022511008011191911051433.7352/
chrUn_gl00021616306116475516445229.3356/
chrUn_gl00021614443414605714527628.9612/
chrUn_gl00022525159260522562725.6978/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random33765350803446172.4959
chrUn_gl00022567218676416751663.7246
chrUn_gl00021675580761737597661.7976
chrUn_gl00021614502214556114527659.9662
chrUn_gl00022811613511907011850258.7368
chrUn_gl00022525406258322562738.9962
chrUn_gl00021464124657306508538.9731
chrUn_gl00022566146982686138.3505
chrUn_gl00021240729412404093835.7404
chrUn_gl00021616947716985516958235.6532
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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