DNA Damage Atlas

GSM3532084-SetA_NM_dmso

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR8372217,SRR8372218


Source Project ID:   

GSE124403

Cell Type:   

GM06990


Organism:   

Homo sapiens


Treatment:   

DMSO


Treatment Time:   

24hrs


Treatment Dose:   

0.02%


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

Break-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random33674350693449070.2552/
chr9_gl000199_random82536836618305364.255/
chr9_gl000199_random16660316919516832456.0406/
chrUn_gl00021464223659896513254.5283/
chrUn_gl00022811557811961111846152.4368/
chr29929102591009343.2406/
chrUn_gl00021675641763347588434.4001/
chrUn_gl00022010134910791510317829.2149/
chrUn_gl00022525343262582565326.1473/
chrUn_gl00021240463413304093625.9195/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random33707350693449069.6029
chrUn_gl00021675641761937588465.789
chrUn_gl00022811557811961111846145.1377
chrUn_gl00021614472914557514532640.3563
chrUn_gl00021464223657546513236.0797
chrUn_gl00021240463412884093628.9032
chrUn_gl00022513145613216113171527.7529
chrUn_gl00022010153010791510317826.5835
chrUn_gl00022525437262582565325.8686
chrUn_gl00022511000411202511039822.6413
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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