DNA Damage Atlas

GSM3532086-SetB_FX_dmso

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR8372222,SRR8372223,SRR8372224,SRR8372225


Source Project ID:   

GSE124403

Cell Type:   

GM03200


Organism:   

Homo sapiens


Treatment:   

DMSO


Treatment Time:   

24hrs


Treatment Dose:   

0.02%


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

Break-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl000212402544132340926100.423/
chrUn_gl00021463872657736464481.7772/
chrUn_gl00021675569764247592074.925/
chrUn_gl00022811510912025311847266.2516/
chrUn_gl00022773583742417388833.0794/
chrUn_gl00021615965916531916356626.9923/
chr99998107401031126.276/
chrUn_gl00022564225716976751423.6541/
chr1878016096780164177801623823.2453/
chrUn_gl00021680460809928068123.204/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl00021240254413234092692.565
chrUn_gl00021463902657736464475.535
chrUn_gl00022811614911977311847255.3835
chrUn_gl00021675569763297592053.6516
chrUn_gl00021612612036153333.1207
chr1013026259713026293613026276719.654
chrUn_gl00022284009847918432118.9518
chr19_gl000208_random4162244617.8004
chrUn_gl00023523570642814.3887
chr131904583319050003190476211.5058
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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