DNA Damage Atlas

GSM3532087-SetB_NM_003aph

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR8372226,SRR8372227


Source Project ID:   

GSE124403

Cell Type:   

GM06990


Organism:   

Homo sapiens


Treatment:   

Aphidicolin in 0.02% DMSO


Treatment Time:   

24hrs


Treatment Dose:   

0.03uM


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

Break-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl000214640226573064397115.063/
chrUn_gl000216755807617375823110.142/
chrUn_gl000225196958197125197005108.554/
chr9_gl000199_random33703351443446675.6862/
chrUn_gl0002167711958152775.6548/
chrUn_gl00021631102312533114474.0673/
chrUn_gl00021694929958954759.7655/
chr1013026261813026289113026283458.2383/
chr1878016401780165697801650255.2594/
chrUn_gl00021618243183761830051.9388/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random33765350803446672.4959
chrUn_gl00022567218676416754163.7246
chrUn_gl00021675580761737582361.7976
chrUn_gl00021614502214556114522959.9662
chrUn_gl00022811613511907011855258.7368
chrUn_gl00022525406258322565238.9962
chrUn_gl00021464124657306439738.9731
chrUn_gl00022566146982692438.3505
chrUn_gl00021616341716391716356936.9559
chrUn_gl00021240729412404087235.7404
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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