DNA Damage Atlas

GSM3532093-SetD_NM_03aph

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR8372235


Source Project ID:   

GSE124403

Cell Type:   

GM06990


Organism:   

Homo sapiens


Treatment:   

Aphidicolin in 0.02% DMSO


Treatment Time:   

24hrs


Treatment Dose:   

0.3uM


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

Break-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random87789882688802566.4458/
chr9_gl000199_random33647350453446947.4751/
chr513296104513296234113296172645.0429/
chr9_gl000199_random986811003119895243.6793/
chr9_gl000199_random16669616902016832043.3896/
chr9_gl000199_random82484837868305743.2713/
chrUn_gl00022811591911980211851638.2834/
chr9_gl000199_random83947856298438238.2036/
chr9_gl000199_random90132963069189434.1067/
chr111697927011697999311697961633.9028/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr513296120613296224813296172655.8779/
chr9_gl000199_random33647350453446947.4751/
chr514903030314903082614903065445.4255/
chr579896062798964177989616842.9155/
chr616670135916670278616670228742.8635/
chr1285009381850101498500993642.326/
chr1114182391141830181418267639.4546/
chrUn_gl00022811591911977511851638.5319/
chr111697930111697994411697961638.0036/
chr910425750310425781110425762037.2206/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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