DNA Damage Atlas

GSM3532094-SetD_NM_dmso

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR8372236


Source Project ID:   

GSE124403

Cell Type:   

GM06990


Organism:   

Homo sapiens


Treatment:   

DMSO


Treatment Time:   

24hrs


Treatment Dose:   

0.02%


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

Break-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random82449835858304457.2457/
chr9_gl000199_random33647352653448150.4028/
chr9_gl000199_random16669416929316831749.4075/
chrUn_gl00022811545911970311846036.4675/
chrUn_gl00022010117510830110312935.9977/
chr513296119213296246413296173735.3625/
chr9_gl000199_random71378760097283832.9335/
chr616670088716670293016670229026.2442/
chrUn_gl00021240405415634091424.5773/
chr9_gl000199_random43552457744430423.1837/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random33707350693448169.6029
chrUn_gl00021675641761937586665.789
chrUn_gl00022811557811961111846045.1377
chrUn_gl00021614472914557514531540.3563
chrUn_gl00021464223657546510036.0797
chrUn_gl00021240463412884091428.9032
chrUn_gl00022513145613216113174427.7529
chrUn_gl00022010153010791510312926.5835
chrUn_gl00022525437262582563225.8686
chrUn_gl00022511000411202511040722.6413
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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