DNA Damage Atlas

GSM3532095-SetD_NM_nt

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR8372237


Source Project ID:   

GSE124403

Cell Type:   

GM06990


Organism:   

Homo sapiens


Treatment:   

NT


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

Break-seq


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random985651002949894951.9838/
chr9_gl000199_random33574351463445650.2158/
chr9_gl000199_random16657516909516831545.3939/
chrUn_gl00022010130810830610313337.7691/
chrUn_gl00022567104676696747437.0124/
chrUn_gl00022811571311985711845036.7112/
chr9_gl000199_random71344760247287130.7016/
chr513296115713296222313296175030.2054/
chrUn_gl00022015270715682615372829.2345/
chrUn_gl00022010873511289011060927.348/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random33574351423445650.3439/
chr9_gl000199_random16667816909516831547.2711/
chrUn_gl00022010134510817310313338.679/
chrUn_gl00022811571311978911845037.2897/
chrUn_gl00022567104676696747437.0124/
chr929867762298683712986801632.9738/
chr111697948111697994011697963131.0773/
rDNA33397672380730.875/
chr513296115713296222313296175030.2054/
chrUn_gl00022015270715682615372829.2345/
Download the Full Merged Peak List


Visualization

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Motif Analysis

Manual





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