DNA Damage Atlas

GSM3532096-SetE_FX_003aph

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR8372238


Source Project ID:   

GSE124403

Cell Type:   

GM03200


Organism:   

Homo sapiens


Treatment:   

Aphidicolin in 0.02% DMSO


Treatment Time:   

24hrs


Treatment Dose:   

0.03uM


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

Break-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl000212402544149440892102.72/
chr9_gl000199_random33734350593446690.4999/
chrUn_gl00021464119657766461869.6917/
chrUn_gl00021675333763817594667.2696/
chr1099438572994388209943869565.3991/
chr9_gl000199_random16669016910216830864.06/
chr513296127913296231713296186861.355/
chr236988463699094369896953.6273/
chrUn_gl00021649005156502753.2185/
chrUn_gl00021614998152721513452.0902/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl000212404544130840892127.324
chrUn_gl00021675601762467594688.634
chrUn_gl00021464119654576461884.4471
chrUn_gl00022811575911960211836252.5741
chrUn_gl00021611991903154238.1752
chrUn_gl00022284040846068439221.4216
chr910144104671029321.2851
chr19_gl000208_random4053822420.5633
chr1013026263413026289613026277119.996
chr131904624319050033190487418.4487
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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