DNA Damage Atlas

GSM3532098-SetE_FX_dmso

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR8372240


Source Project ID:   

GSE124403

Cell Type:   

GM03200


Organism:   

Homo sapiens


Treatment:   

DMSO


Treatment Time:   

24hrs


Treatment Dose:   

0.02%


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

Break-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random82502836158309941.4885/
chr9_gl000199_random33629352153446039.574/
chrUn_gl00021463902657836507835.2526/
chr9_gl000199_random16662116918716830334.8158/
chrUn_gl00021240187432084089933.471/
chrUn_gl00022811614911977311846024.9552/
chr9_gl000199_random83715858828436724.2994/
chr9_gl000199_random71361761347291823.832/
chr9_gl000199_random88913963179187723.7964/
chr9_gl000199_random43823458354499221.7555/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl00021240254413234089992.565
chrUn_gl00021463902657736507875.535
chrUn_gl00022811614911977311846055.3835
chrUn_gl00021675569763297593053.6516
chrUn_gl00021612612036160033.1207
chr1013026259713026293613026277619.654
chrUn_gl00022284009847918440318.9518
chr19_gl000208_random4162220117.8004
chrUn_gl00023523570638714.3887
chr131904583319050003190474011.5058
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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