DNA Damage Atlas

GSM3532099-SetE_FX_nt

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR8372241


Source Project ID:   

GSE124403

Cell Type:   

GM03200


Organism:   

Homo sapiens


Treatment:   

NT


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

Break-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl000212404464167440918112.826/
chrUn_gl00021675585762647599091.7768/
chr9_gl000199_random33754357043445975.5712/
chr9_gl000199_random55368577775578670.5438/
chr9_gl000199_random10356711101110723166.9502/
chr9_gl000199_random43815457964430259.1284/
chrUn_gl00021463532659156462846.5906/
chrUn_gl00021614980153011513244.318/
chr9_gl000199_random39625425714026542.9882/
chr236988603699083369897042.645/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random337543486034459128.277/
chrUn_gl000212404584167440918113.939/
chrUn_gl000216755857620675990100.1/
chr9_gl000199_random43815457964430259.1284/
chrUn_gl00021463987659156462856.9441/
chr9_gl000199_random39781425714026544.699/
chrUn_gl00021614980153011513244.318/
chr513296119613296235113296192042.7077/
chr236988603699083369897042.645/
chrUn_gl00022811558611981611847640.7964/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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