DNA Damage Atlas

GSM3532102-SetE_NM_dmso

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR8372244


Source Project ID:   

GSE124403

Cell Type:   

GM06990


Organism:   

Homo sapiens


Treatment:   

DMSO


Treatment Time:   

24hrs


Treatment Dose:   

0.02%


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

Break-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random33515351123445961.6774/
chr9_gl000199_random16656716921816830147.5483/
chrUn_gl00022811553211982411845547.1886/
chrUn_gl00021675351764297599641.0524/
chr9_gl000199_random43690458464430228.9669/
chrUn_gl00021616295316489616443122.7272/
chrUn_gl00021464059659766511020.2805/
chrUn_gl00022510994111338111155219.6993/
chrUn_gl00022010126210834910198518.6122/
chrUn_gl00022513145613425113377817.427/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random33707350693445969.6029
chrUn_gl00021675641761937599665.789
chrUn_gl00022811557811961111845545.1377
chrUn_gl00021614472914557514528440.3563
chrUn_gl00021464223657546511036.0797
chrUn_gl00021240463412884087628.9032
chrUn_gl00022010153010791510198526.5835
chrUn_gl00022525437262582565225.8686
chrUn_gl00022511000411202511155222.6413
chrUn_gl00022565367207686222.4957
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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