DNA Damage Atlas

GSM3573062-KO_gH2AX

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR8464083


Source Project ID:   

GSE125379

Cell Type:   

U2OS


Organism:   

Homo sapiens


Genotype:   

RB1-/-


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 500


Technique:   

ChIP-seq (anti-γH2AX)


Others:   

control: GSM3573058-KO_input; GSM3573059-KO_input_2


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr674229600742309997423029921.0312/
chr627100000271005992710029911.657/
chr134905400049055999490549996.9327/
rDNA2820028799284995.33908/
rDNA4007995995.20995/
chr115246000524779952468994.23688/
rDNA4160042399419993.8025/
rDNA1260014999137992.97726/
chr134893680048937199489369992.3378/
rDNA1600319923991.90006/
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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