DNA Damage Atlas

GSM3583261-TAK_1358-S_cerevisiae_HydEn-seq_pol3-L612G_rnh201_NT

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR8503251


Source Project ID:   

GSE125855

Organism:   

Saccharomyces cerevisiae


Strain:   

pol3-L612G rnh201delta


Treatment:   

NT


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 4000


Technique:   

HydEn-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr8_ref_v256231756264356257427038.7-
chr14_ref_v278370778427778410221507.7-
chr3_ref_v23350820017564.3+
chr4_ref_v21305119669.46+
chr4_ref_v27706477466772669013.31+
chr11_ref_v26658686664416664038489.24-
chr10_ref_v27147117156397151708243.86-
chr3_ref_v23119613124403124177327.54-
chr10_ref_v27447167453427453336684.39-
chr12_ref_v24580254595074586376583.24+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr8_ref_v25623175626335625749179.48-
chr14_ref_v27837077842767841027621.11-
chr3_ref_v2545062006037.63+
chr12_ref_v24580254593944586375789.61+
chr4_ref_v27706477466772665774.05+
chr12_ref_v24597704602334597795299.97+
chr12_ref_v24669644686314677744989.55+
chr11_ref_v26660896664336664034519.35-
chr10_ref_v27147197155667151704464.01-
chr7_ref_v21805331811621811623985.01-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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