DNA Damage Atlas

GSM3583268-TAK_1372-S_cerevisiae_HydEn-seq_pol3-L612G_rnh201_RNaseHII

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR8503258


Source Project ID:   

GSE125855

Organism:   

Saccharomyces cerevisiae


Strain:   

pol3-L612G rnh201delta


Treatment:   

RNase HII


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 4000


Technique:   

HydEn-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr12_ref_v24582204595734590207246.21+
chr12_ref_v24670154687294681575630.15+
chr12_ref_v24597794602944597795555.52+
chr9_ref_v24383714390754390135493.02-
chr8_ref_v25622825626455625904720.81-
chr14_ref_v27833467842757842734375.07-
chr10_ref_v27446117453377453373906.9-
chr11_ref_v26660896664406664322882.49-
chr3_ref_v23117643124393124112874.19-
chr13_ref_v25108590756482855.29+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr12_ref_v24582264595054590206052.7+
chr12_ref_v24670294687044681574984.28+
chr12_ref_v24525224541634530282953.09+
chr12_ref_v24543724547424546162830.74+
chr8_ref_v25622825626035625902282.59-
chr9_ref_v24383714390674390132094.28-
chr14_ref_v27833467842737842732025.53-
chr10_ref_v27446117453377453371876.76-
chr12_ref_v24515294518374516621699.8+
chr7_ref_v2196551051385.99+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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