DNA Damage Atlas

GSM3583271-TAK_1811-S_cerevisiae_HydEn-seq_rnh201_NT

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR8503261


Source Project ID:   

GSE125855

Organism:   

Saccharomyces cerevisiae


Strain:   

rnh201delta


Treatment:   

NT


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 4000


Technique:   

HydEn-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr7_ref_v21805331811621811629285.02-
chr4_ref_v27706477466772666580.31+
chr12_ref_v24580224594294586376533.04+
chr12_ref_v24597724602664597796532.18+
chr9_ref_v24194374199494194376040.42+
chr12_ref_v24669664686654677745706.02+
chr8_ref_v25623165626355625744683.48-
chr6_ref_v21852881854881852883974.38+
chr14_ref_v27835637842757842673556.46-
chr1_ref_v21893601901821899823518.37+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr14_ref_v245544345544645544310421.7+
chr7_ref_v21805331811621811627305.11-
chr4_ref_v27706477466772666939.16+
chr3_ref_v2595042195017.42+
chr10_ref_v27147217155817151704245.43-
chr9_ref_v24194374199494194374056.84+
chr6_ref_v21852881854881852883375.39+
chr1_ref_v21893601901821899822669.87+
chr13_ref_v21298801303281299122464.22+
chr4_ref_v23303112393.25+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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