DNA Damage Atlas

GSM3583300-TAK_1964-S_pombe_HydEn-seq_rnh201_NT

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR8503290


Source Project ID:   

GSE125855

Organism:   

Schizosaccharomyces pombe


Strain:   

rnh201delta


Treatment:   

NT


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 4000


Technique:   

HydEn-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
NC_001326.1802910151949926133.1+
NC_003423.345366094537649453691919076.5-
NC_001326.123934371390918700.3-
NC_001326.114438157811492217413.4+
NC_001326.110537108451056216488.1-
NC_001326.144594689465916170.6-
NC_001326.119220490616144.5-
NC_001326.113046136991366215639.8-
NC_003423.345387854539944453961314533.1-
NC_001326.117251195761844314219.6+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
NC_001326.182929875949925418.8+
NC_001326.123934371390917461.6-
NC_001326.114641157651492215927.2+
NC_001326.136220490615161.3-
NC_003423.345366094537614453691914545.9-
NC_001326.117307193271844314408.5+
NC_001326.116431169401694012634.4-
NC_003423.345387964539720453961312319-
NC_003423.34535257453627845356147547.71-
NC_003421.26659466794667941832.74-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab