DNA Damage Atlas


GSM3601946-CHIP_DMC1_Ankrd31wt_1




Basic Information

Manual

Sample ID:   

SRR8566366


Source Project ID:   

GSE126443

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

C57BL/6JCrl


Harvested Time:   

age: adult


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

ChIP-seq (anti-DMC1)


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrX78486698784893067848833135.2508-
chr1765833990658350536583407929.9232+
chrX10391013110391134510391103527.4794+
chrX52952479529559315295430226.7445+
chr1150416855042454504179726.2304-
chrX64875305648772656487653026.1244+
chrX15229268115229312915229295425.9759-
chr1854613675462677546203725.4657-
chr398136176981388979813743425.0907+
chrX36931402369330413693238425.0874+
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrX78486698784893067848833135.2508-
chr1765833990658350536583407929.9232+
chrX10391013110391134510391103527.4794+
chrX52952479529559315295430226.7445+
chr1150416855042454504179726.2304-
chrX64875305648772656487653026.1244+
chrX15229268115229312915229295425.9759-
chr1854613675462677546203725.4657-
chr398136176981388979813743425.0907+
chrX36931402369330413693238425.0874+
Download the Full Merged Peak List



Motif Analysis

Manual





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