DNA Damage Atlas

GSM3601949-CHIP_DMC1_Ankrd31ko_2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR8566369


Source Project ID:   

GSE126443

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

Ankrd31 tm1Atot


Genotype:   

Ankrd31-/-


Harvested Time:   

age: adult


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

ChIP-seq (anti-DMC1)


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrX11716186117180211171703843.3617+
chrX51889307518912865189046342.1211+
chr1765833965658352456583407941.442+
chr1717653500176539101765363140.0462-
chrX10781514510781737710781651339.61+
chrX64875307648772656487653038.0576+
chrX16635942716636096416636019736.9777-
chr585230261852322128523173936.8994-
chrX10391031410391196710391103536.675+
chrX78487301784893087848833136.4991-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrX64876080648768606487653074.4843+
chrX10391082510391150310391103563.336+
chr1845058919450592854505919758.6637+
chrX11778791311778900811778875554.2107+
chrX10781518710781670310781651352.4859+
chrX11716781117178981171703850.8816+
chrX20424952204264912042543050.8809+
chrX10572853010572878410572856649.7242+
chrX51889753518912865189046348.1965+
chrX16783451167852291678412947.5932-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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