DNA Damage Atlas

GSM3658080-UVB_rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR8695992


Source Project ID:   

GSE127966

Cell Type:   

A375


Organism:   

Homo sapiens


Treatment:   

UVB (310 nm)


Treatment Dose:   

10000 J/m2


Layout:   

PAIRED


Instrument model:   

NextSeq 500


Technique:   

CPD-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA2821129248286065.32742+
rDNA1325914913137964.85194-
rDNA2015320755201762.99459+
chrUn_gl0002204488746948459262.62408+
chrUn_gl0002202611929437279072.60269-
chrUn_gl0002201007311425062.51159+
chrUn_gl0002207911580849794152.43143+
chrUn_gl0002201518816697154962.38932-
chrUn_gl0002205492359484564252.37788+
chrUn_gl0002205993161243601312.37133-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA2830129195286066.60723+
rDNA1325914898137964.87028-
chr71092292531092292891092292632.9944-
chr12073396212073397542073397382.97568+
chrUn_gl0002201007282125062.78512+
rDNA2015320755201762.69318+
chrUn_gl0002249363594176939422.6875-
chrUn_gl0002202617229437279072.63285-
chrUn_gl0002204488746948459262.52962+
chrUn_gl0002203323035336337492.47945+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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