DNA Damage Atlas

GSM3687236-CD34_DMSO_rep1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR8786569


Source Project ID:   

GSE121740

Cell Type:   

CD34+ bone marrow cell


Organism:   

Homo sapiens


Treatment:   

DMSO


Treatment Time:   

4hrs


Treatment Dose:   

20uM


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 500


Technique:   

sBLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr12120729568120729832120729604234.374+
chr22433639454336429443363985114.099+
chr417325093717325113917325093790.9833+
chr222215752722215772722215752788.8301+
chr637762645377628453776264585.767+
chr1071923700719239047192387881.0822-
chrUn_gl00021240210413824081881.0207-
chrUn_gl00022015291615508715410680.4224-
chr493466222934665649346649077.0255-
chr111342205211342225211342205276.5777+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr12120729568120729832120729604210.817+
chrUn_gl000212404584138040818103.525-
chrUn_gl00022010902411124611013486.2344-
rDNA34155624471484.8217-
chrUn_gl00022015291615508715410682.2851-
chrUn_gl00022015813716027515875778.8832-
chr1071923700719239047192387878.4064-
chrUn_gl00022011321511648111478565.8213-
chr2243363945433642944336398561.4762+
chr1573868017738683667386821857.1457-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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