DNA Damage Atlas

GSM3687237-CD34_ETO_rep1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR8786570


Source Project ID:   

GSE121740

Cell Type:   

CD34+ bone marrow cell


Organism:   

Homo sapiens


Treatment:   

Etoposide


Treatment Time:   

4hrs


Treatment Dose:   

30uM


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 500


Technique:   

sBLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.029412


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl00021240284414304083348.1896+
chrUn_gl00022015693916043615736034.9373+
chrUn_gl00022010875211277610965533.7279+
chrUn_gl00022015264715690415362732.022+
rDNA758611177965431.8377+
rDNA35875501229.6169+
chr1061281426128986612848725.6641+
chr298885519988865569888578418.0969+
chr1854491993544929705449278815.6964-
chr1775135731751369977513610315.4597+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl00021240284414304083351.0856+
rDNA32515875501248.6755+
chrUn_gl00022015693916043615736035.8957+
chrUn_gl00022010875511277610965534.2249+
chrUn_gl00022015265115688615362732.1389+
chr1061281426128986612848727.3327+
chr298885519988865569888578419.5953+
chr1532160178321607073216029117.5371+
chr1775135731751368867513610316.7454+
chr1748938368489392624893886015.833-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab