DNA Damage Atlas

GSM3687238-CD34_DMSO_rep2

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR8786571


Source Project ID:   

GSE121740

Cell Type:   

CD34+ bone marrow cell


Organism:   

Homo sapiens


Treatment:   

DMSO


Treatment Time:   

4hrs


Treatment Dose:   

20uM


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 500


Technique:   

sBLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl000212404584138040756104.725+
chr1212072933712072987012072960494.9261+
rDNA34155624471494.7644-
chrUn_gl00022010900311124611013484.5461-
chrUn_gl00022015286415524715410676.6617-
chr213349599813349620113349619976.1036-
chr1071923694719239047192387873.5668-
chr469921395699216116992159571.5233-
chrUn_gl00022011321511648111478569.1801-
chr476650448766510237665052965.8263+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr12120729568120729832120729604210.817+
chrUn_gl000212404584138040756103.525+
chrUn_gl00022010902411124611013486.2344-
rDNA34155624471484.8217-
chrUn_gl00022015291615508715410682.2851-
chrUn_gl00022015813716027515875778.8832-
chr1071923700719239047192387878.4064-
chrUn_gl00022011321511648111478565.8213-
chr2243363945433642944336414061.4762+
chr1573868017738683667386811457.1457-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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