DNA Damage Atlas

GSM3687239-CD34_ETO_rep2

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR8786572


Source Project ID:   

GSE121740

Cell Type:   

CD34+ bone marrow cell


Organism:   

Homo sapiens


Treatment:   

Etoposide


Treatment Time:   

4hrs


Treatment Dose:   

30uM


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 500


Technique:   

sBLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.038462


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl00022011300811660611338836.806+
chrUn_gl00022015688916059015736034.8298+
chrUn_gl00022010875511284110965534.1732+
rDNA74828589796133.6535+
rDNA32517477423533.178+
chrUn_gl00022015265115688615362732.0894+
chrUn_gl00021240105425434086629.3537+
chr1061280736129276612848720.4122+
chr493465936934666069346642516.6379-
chr1775135691751368867513611716.0386+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl00021240284414304086651.0856+
rDNA32515875423548.6755+
chrUn_gl00022015693916043615736035.8957+
chrUn_gl00022010875511277610965534.2249+
rDNA75868589796133.6528+
chrUn_gl00022015265115688615362732.1389+
chr1061281426128986612848727.3327+
chr298885519988865569888584619.5953+
chr1532160178321607073216029317.5371+
chr1775135731751368867513611716.7454+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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