DNA Damage Atlas


GSM3714864-END_seq_PB_LIG4_2_5h_TRANSLOCATION




Basic Information

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Sample ID:   

SRR8870058


Source Project ID:   

GSE129524

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Etoposide


Treatment Time:   

2.5hrs


Treatment Dose:   

50uM


Genotype:   

Lig4-/-


In-situ Treatment:   

Exo VII + Exo T


Cell Phase:   

G1


Spike-in Intensity:   

29.6015


Spike-in percentage:   

2%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Others:   

control: GSM3714883-END_seq_PB_LIG4_NT_control


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

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Ratio of (G-rich strand/C-rich strand): 0.026964



Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL456389985611349106783617.7-
chrX143482786143483518143483102128.045-
chr214717711514717913114717792883.14+
chr1633820211338216243382092745.5662+
chr1727534408275357622753483827.6684-
chr1279792885797946057979373724.0997-
chr358654795586559605865539220.3376+
chr743378123433790594337846520.2913-
chrX11628684611628769311628716919.9569+
chrX14464480314464616614464565019.8218-
Download the Full Peak List



Motif Analysis

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