DNA Damage Atlas


GSM3714865-END_seq_PB_LIG4_AsiSI_TRANSLOCATION




Basic Information

Manual

Sample ID:   

SRR8870059


Source Project ID:   

GSE129524

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Genotype:   

Lig4-/-


In-situ Treatment:   

Exo VII + Exo T


Cell Phase:   

G1


Targeted break:   

AsiSI


Spike-in Intensity:   

8639.07


Spike-in percentage:   

2%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.002627



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr195352894153528944/1855850/
chr3139074689139074692/1664930/
chr21899744618997449/1507460/
chr137570811275708115/1501440/
chr13111808948111808951/1496220/
chr3116808386116808389/1457350/
chr3145989049145989052/1442920/
chr119820368398203686/1277500/
chr57329285273292855/1267290/
chr162051698720516990/1227390/
Download the Full Peak List




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