DNA Damage Atlas


GSM3714866-END_seq_PB_LIG4_2_5h_DRB_TRX




Basic Information

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Sample ID:   

SRR8870060


Source Project ID:   

GSE129524

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

DRB + Etoposide


Treatment Time:   

2hrs + 2.5hrs


Treatment Dose:   

150mM DRB + 50uM Etoposide


Genotype:   

Lig4-/-


In-situ Treatment:   

Exo VII + Exo T


Cell Phase:   

G1


Spike-in Intensity:   

27.0225


Spike-in percentage:   

2%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Others:   

control: GSM3714883-END_seq_PB_LIG4_NT_control


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

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Ratio of (G-rich strand/C-rich strand): 0.006692



Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr2147177132147179146147177928182.358+
chr1640717945407181464071794672.8007+
chr812050623512050729412050678846.784+
chr1727534368275358932753483840.958-
chr499234664992361699923515338.5915-
chr971959551719608177196026838.0643+
chr1414293906142951441429458937.8307+
chr162719486273391627242637.0572+
chr1582039965820413948204088434.7654-
chr111945785011945900011945838434.5206-
Download the Full Peak List



Motif Analysis

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