DNA Damage Atlas


GSM3714867-END_seq_ExoT_PB_LIG4_2_5h_DRB_TRX




Basic Information

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Sample ID:   

SRR8870061


Source Project ID:   

GSE129524

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

DRB + Etoposide


Treatment Time:   

2hrs + 2.5hrs


Treatment Dose:   

150mM DRB + 50uM Etoposide


Genotype:   

Lig4-/-


In-situ Treatment:   

Exo T


Cell Phase:   

G1


Spike-in Intensity:   

158.955


Spike-in percentage:   

2%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Others:   

control: GSM3714884-END_seq_ExoT_PB_LIG4_NT_control


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

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Ratio of (G-rich strand/C-rich strand): 0.002598



Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr21471769961471785661471779281839.75+
chr107229703872297868722972161532.43+
chr71044276011044282181044280661197.49-
chr2707818077078208970782024812.644-
chr14825278898252808982528089783.332-
chrY645339006453411764534109600.466-
chr14106331331106331696106331475552.909+
chr7130389613130390198130390181395.226-
chr14142942911429481714294589353.075+
chr2163123201631299816312628341.742-
Download the Full Peak List



Motif Analysis

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