DNA Damage Atlas


GSM3714868-END_seq_PB_LIG4_AsiSI_DRB_TRX




Basic Information

Manual

Sample ID:   

SRR8870062


Source Project ID:   

GSE129524

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

DRB


Treatment Time:   

2hrs


Treatment Dose:   

150mM


Genotype:   

Lig4-/-


In-situ Treatment:   

Exo VII + Exo T


Cell Phase:   

G1


Targeted break:   

AsiSI


Spike-in Intensity:   

8567.16


Spike-in percentage:   

2%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.002766



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr195352894153528944/3204870/
chr3145989049145989052/2884970/
chr3139074689139074692/2608620/
chr137570811275708115/2463930/
chr23197470331974706/2441360/
chr2156144262156144265/2378670/
chr1125435718125435721/2334860/
chr57329285273292855/2328660/
chr1143739618143739621/2302730/
chr159939343499393437/2249800/
Download the Full Peak List




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