DNA Damage Atlas


GSM3714869-END_seq_PB_LIG4_2_5h_IFNB_TRX




Basic Information

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Sample ID:   

SRR8870063


Source Project ID:   

GSE129524

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

IFNβ + Etoposide


Treatment Time:   

Etoposide: 2.5hrs


Treatment Dose:   

50uM Etoposide


Genotype:   

Lig4-/-


In-situ Treatment:   

Exo VII + Exo T


Cell Phase:   

G1


Spike-in Intensity:   

21.0731


Spike-in percentage:   

2%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Others:   

control: GSM3714883-END_seq_PB_LIG4_NT_control


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

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Ratio of (G-rich strand/C-rich strand): 0.005384



Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr2147176985147179495147177928113.235+
rDNA34948438624283348.733-
chr1266946675669468766694667645.3735+
chr1010577407710577491010577464144.8833-
chr499234566992361969923515344.2044-
chr1727534314275359602753483843.8574-
chr162713836273303627242637.9531+
chr1621192381211932222119287137.3886+
chr1829558806295590542955885334.762+
chr463180949631823936318171633.4331+
Download the Full Peak List



Motif Analysis

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