DNA Damage Atlas


GSM3714870-END_seq_ExoT_PB_LIG4_2_5h_IFNB_TRX




Basic Information

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Sample ID:   

SRR8870064


Source Project ID:   

GSE129524

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

IFNβ + Etoposide


Treatment Time:   

Etoposide: 2.5hrs


Treatment Dose:   

50uM Etoposide


Genotype:   

Lig4-/-


In-situ Treatment:   

Exo T


Cell Phase:   

G1


Spike-in Intensity:   

57.0434


Spike-in percentage:   

2%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Others:   

control: GSM3714884-END_seq_ExoT_PB_LIG4_NT_control


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

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Ratio of (G-rich strand/C-rich strand): 0.001779



Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr2147176876147179150147177932323.481+
chr14825278898252808982528089137.88-
chr12797930157979408079793737110.881-
chr1174526395745270947452676283.3444-
chr216311486163130241631262873.4936-
chr459782368597839475978300369.5247+
chr833796882337978513379742868.3634+
chr358655193586565015865539359.7424+
chr1584465335844678948446703255.9399+
chr1727032416270336742703299155.8646-
Download the Full Peak List



Motif Analysis

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