DNA Damage Atlas


GSM3714871-END_seq_PB_LIG4_0_5h_TIME_COURSE




Basic Information

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Sample ID:   

SRR8870065


Source Project ID:   

GSE129524

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Etoposide


Treatment Time:   

0.5hr


Treatment Dose:   

50uM


Genotype:   

Lig4-/-


In-situ Treatment:   

Exo VII + Exo T


Cell Phase:   

G1


Spike-in Intensity:   

14.4695


Spike-in percentage:   

2%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Others:   

control: GSM3714883-END_seq_PB_LIG4_NT_control


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

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Ratio of (G-rich strand/C-rich strand): 0.009057



Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr214717728714717875514717792858.5262+
chr971959637719608557196026852.471+
chr195807407958079469580747842.5788+
chr116636004216636083816636043540.3982+
chr1249726764973904497320830.9044+
chr888161100881622598816169530.5355-
chr514514047814514137714514094330.4742-
chr463181174631822856318171629.1058+
chr743378069433786994337846528.9432-
chr1727534373275357542753483828.3586-
Download the Full Peak List



Motif Analysis

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