DNA Damage Atlas


GSM3714873-END_seq_PB_LIG4_2_5h_TIME_COURSE




Basic Information

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Sample ID:   

SRR8870067


Source Project ID:   

GSE129524

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Etoposide


Treatment Time:   

2.5hrs


Treatment Dose:   

50uM


Genotype:   

Lig4-/-


In-situ Treatment:   

Exo VII + Exo T


Cell Phase:   

G1


Spike-in Intensity:   

20.3042


Spike-in percentage:   

2%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Others:   

control: GSM3714883-END_seq_PB_LIG4_NT_control


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

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Ratio of (G-rich strand/C-rich strand): 0.008285



Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr214717713414717913014717792898.1683+
chr499234545992360389923515339.7502-
chr1727534368275359482753483838.3501-
chr215334695415334805415334732534.249-
chr111945793711945900011945838432.0482-
chr1829558613295590552955885330.2663+
chr1414293971142952021429458929.1127+
chr712247029712247117812247073929.0667-
chrX11628683811628737411628716928.017+
chr1575087939750888477508832027.3719+
Download the Full Peak List



Motif Analysis

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