DNA Damage Atlas


GSM3714874-END_seq_PB_LIG4_5h_TIME_COURSE




Basic Information

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Sample ID:   

SRR8870068


Source Project ID:   

GSE129524

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Etoposide


Treatment Time:   

5hrs


Treatment Dose:   

50uM


Genotype:   

Lig4-/-


In-situ Treatment:   

Exo VII + Exo T


Cell Phase:   

G1


Spike-in Intensity:   

21.2068


Spike-in percentage:   

2%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Others:   

control: GSM3714883-END_seq_PB_LIG4_NT_control


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

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Ratio of (G-rich strand/C-rich strand): 0.012298



Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr2147177042147178920147177942131.911+
chr1829558792295590542955885358.5961+
chrX43673914436742244367413146.6797-
chr499234589992362159923515337.9474-
chr1727534206275358932753483834.7465-
chr111945791311945900011945838433.6192-
chr1633820147338216383382092033.4269+
chr1279491888794928907949235731.7427+
chr162712736273476627242630.3091+
chr213160239131604731316024530.2925+
Download the Full Peak List



Motif Analysis

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